How is this much different than doing jump squats (COM change notwithstanding)?
But in the case of a full squat versus a quarter squat we *do* have more information than just velocity and mass; we know the maximal distance over which force could have been applied (the human body being a set of levers with fixed lengths).
Let's assume:
.a constant net force produced by the lifter from the bottom of each squat
.that a quarter squat covers distance k0, and the full squat k1, k1>k0.
.a bar weight of 100kg
.at the point of measurement the bar is moving at v=1m/s (your mixing of m/s and lbs above almost gave me an aneurysm, btw

.
.that position 0 will be the bottom of each squat, and velocity at this point is 0m/s.
.the time it takes the quarter squat to happen is t0 and the full squat is t1, with initial time measure as 0 from the bottom of each squat.
The change in the bar's kinetic energy is, in both cases, 50J; since force is constant, we get for the quarter squat:
integral(0,k0) F ds = 50J
This yields:
F*k0 = 50J, so F = 50/k0 N
The change in the bar's momentum in both cases is 100Ns; since we know the force, the impulse for the quarter squat is:
integral(0,t0) F dt = 100Ns
integral(0,t0) 50/k0 dt = 100Ns
so:
50t0/k0 = 100Ns
t0 = 2*k0 sec
By construction, then, t1 = 2*k1 sec
Now we know everything. Since F = 50/k0 for the quarter squat:
.acceleration = 1/(2k0)
.velocity = t/(2k0) (note, plug-in 2k0 for the time yields velocity = 1m/s)
.position = t^2/(4k0)
Moreover, note that F = 50/k0 for the quarter squat, and F = 50/k1 for the full squat. Since k1>k0, this means that the quarter squat takes more force to achieve the same velocity as the full squat for a given load under conditions of constant force.
Here's a picture for the case where k0=1 and k1=2 (so the full squat moves twice the distance as the quarter squat)
http://i47.tinypic.com/mmbjma.png
Now, of course, the picture gets more complicated for non-constant force. But this does raise the question of whether the improvement in mechanics that the quarter squat affords give it the extra force production it needs to trump the full squat in cases where velocity at the top matters.
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