What "other version of Starting Strength" are you referring to? Are the imbalances a concern of function or aesthetics?
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Please eat more.
I have little to no info on training with hemophilia. You could search the other parts of the forum to see what the effect has been.
All that said, if you're lifting for aesthetics, you're on the wrong program. If you're looking to get stronger, do the program as explained in the book.