You're squatting "into your knees" rather than "into your hips" and your chest/back angle is too vertical. With a long torso/short legs you'll be more upright than most, but not that much :-)
I can't see your feet but I suspect that a) your stance is too narrow and b) you end up on your toes at the bottom of the squat.
Yes, you're significantly above parallel.
First widen your stance a bit.
Next, from the top of the rep, your knees will go forward and out and at the same time you will push your hips back towards the wall behind you. Really reach back as hard as you can. This will point your chest towards the ground and give you a more horizontal back angle.
Your knee travel forward will stop about 1/3 to halfway down, and then you just keep sitting back and down. Think HIPS the whole time.
If you feel like your weight is shifting onto your toes, again, think about sitting back. Also, look up the Master Cue in the book.
Look at the photos in the squat chapter again and compare. There are also lots of video resources on the website that you can look at, and compare to your squat. You could also look at the Art of Manliness videos on youtube, of Rip coaching Brent McKay.
Have another go and repost. You will probably have to deload in order to get to depth.